rs31579548 SNP Detail

Summary

• ID
  rs31579548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:97840775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAT TCCAAAGCCT TTCTCAACTC
  R
  ACATGAACTC CAGGGAAGCC TAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46047443	mCV23541950	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A		G
ss47075127	NES11612157	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G		A		A	A	G		A	A	G	A
ss145464773	ENSMUSSNP2478816	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31579548					SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47075127	NES11612157	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:97840775 () rs orientation: forward

Symbol	Name	Function Class
B3gnt6	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6	847 bp downstream
Cpgi19443	CpG island 19443	1986 bp proximal
Rr651557	regulatory region 651557	770 bp distal
Rr651558	regulatory region 651558	267 bp proximal
Rr651559	regulatory region 651559	473 bp proximal
Rr651560	regulatory region 651560	1905 bp proximal