rs31579695 SNP Detail

Summary

• ID
  rs31579695
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:118574245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTGCTTTG GCTTTGAGCT GAAGTGATAT CAGTTTAGAA
  AACACGTATG TGCACACATG CACACATACA TGCTTACACA TGTACACGCA CATATACATG
  Y
  ACACATACAC GTTGAAAACA CAGGACCCAC CCAAAGGGAG TTTTTAATTA AAAAGGTAAC
  CTGTGGTGTT CAGGTGAGAG CCTATTTGCT GCAGATAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	NZW/LacJ
ss48066864	NES11878606	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	NZW/LacJ
rs31579695					SNP	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48066864	NES11878606	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118574245 () rs orientation: forward

Symbol	Name	Function Class
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	within coordinates
Gm38887	predicted gene, 38887	within coordinates