rs31579741 SNP Detail

Summary

• ID
  rs31579741
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78979291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGATACT CTGTCTCTTT
  TGGTTTTTTT TTCGAGACAG GGTTTCTCTG TATAGCCCTG GCTGTCCTGG AACTCACTCT
  GTAGACCAGG CTGGCCTCGA ACTCAGAAAT CCGCCTGCCT CTGCCTCCCG AGTGCTGGGA
  TTAAAGGCGT GCGCCACCAC GCCCGGCTGA TACTCTGTCT CGAGAAAAAA AAAAAAGTGT
  R
  TCCTGAACTA ATTTTATTAG TTGTTCTGCC CAGATTAGTA CCTGCTGGCA GACAGAGTTG
  GGCCTCCTCT GCAGATCTGT TGTACAGTCC TCTGTATGTG GTGGAGGCAG TGTTTGAGAC
  AGGGCTGTGT ACCCCAGCAT GACCTCACAC ATAATCCTGC TGCTGTTGCA GCTTTTCTAC
  TAGGATTAGA GATTTTTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48067131	NES12090939	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31579741					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48067131	NES12090939	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78979291 () rs orientation: forward

Symbol	Name	Function Class
Eif3l	eukaryotic translation initiation factor 3, subunit L	691 bp downstream
Gm25072	predicted gene, 25072	34 bp upstream
Rr505520	regulatory region 505520	1326 bp distal
Rr505521	regulatory region 505521	1529 bp proximal