rs31579934 SNP Detail

Summary

• ID
  rs31579934
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171978495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTTCACC GCTGAGTCAC
  CTCCAGCCCC AGTGAACCAT TTCTTCAGCT TGTTTATTTG ACTTTTGAGA CAGGAACTCA
  CTTTATCCCA GGCTGACCTG AAATTTATAA TGCACACCAG GCTGGTCTTG CAAACTTGTC
  TCACCTAGCC TCCTAAGTAC TGGTGTACTG GTGTGAGGCA CCAATCATAG GTAATACATA
  R
  CAGGTGTTTG CTTTGTACCC ATCTTTCTAT TTTGTTTGTT TTCTTTTAAG AACTAGGGCC
  TAAGAGCCGG CTGTGGTGGC GCACGCCTTT ATTCCCAGCA CTCGGGAGGC AGAGACAGGC
  GGATTTCTGA GTTCAAGGCC AGCCTGGTCT ACAAAGTGAA TTCCAGTACA GCCAGGGCTA
  CACAAAGAAA CCCTGTCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49753186	NES13042466	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31579934					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49753186	NES13042466	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171978495 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dcaf8	DDB1 and CUL4 associated factor 8			Intron
				Noncoding-Transcript-Variant
Rr372457	regulatory region 372457			1176 bp downstream
Rr423471	regulatory region 423471			1079 bp distal
Rr423472	regulatory region 423472			795 bp distal