rs31579936 SNP Detail

Summary

• ID
  rs31579936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171977787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCGGAA CACAGTTGTC
  AGTATGGTTC CTACAAGGCT TGTAGATTGC TCGTAGCAGA GGGTAGGACT GTGCTTGAGA
  CTGGCAAGAC TTAGTAGAGA AGCCCCCTGA CTCTTTAAGG TAGGTTTGAC CAATCCTAGT
  ACCTTTGGGA TTTGTACTGG GAAAAGTTTG AGAGTGGCTA TGCTAAGTTT TGTTCCCCGT
  R
  GTGCTCAAAA CTAGAAAATG TTCATTATGA AGTAACATAA AAACTTTGAA TGCGGATGCA
  TGTATGTAAG ATGTAAGAGT AAGCTTTTAC ATTTTAATTT GGTTTTATGT CTGGGTGTTT
  TACCTGCATG GCTGTCTGTG CAACGCTTGC ATGACTCATG CTGGAGACGA TCAGAAGAGG
  GTCTCAGATC CCTGGAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49753188	NES13042477	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31579936					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49753188	NES13042477	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171977787 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1037	CpG island 1037			1315 bp distal
Dcaf8	DDB1 and CUL4 associated factor 8			Intron
				Noncoding-Transcript-Variant
Rr372457	regulatory region 372457			468 bp downstream
Rr423471	regulatory region 423471			371 bp distal
Rr423472	regulatory region 423472			87 bp distal