rs31579938 SNP Detail

Summary

• ID
  rs31579938
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171977356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG TGAGCCTCCA TTTAGTTGGT
  R
  TCTAAGTCCA GTTAGCCTCA GAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49753190	NES13042545	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G		G	G	G	G		A		G	G		G
ss120006874	PARCsnp_1.17515	PARC_SEQ	INBRED	f	SNP							A		G
ss120009746	PARCsnp_1.07140	PARC_SEQ	INBRED	f	SNP							A		G
ss146182875	ENSMUSSNP5882020	ENSEMBL	ENSEMBL_Sanger	f	SNP		G												A
ss320122959	CHEV_1_174079920	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31579938					SNP	G	G	G	G	A	G	A	G	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49753190	NES13042545	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171977356 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1037	CpG island 1037			884 bp distal
Dcaf8	DDB1 and CUL4 associated factor 8			Intron
				Noncoding-Transcript-Variant
Gm70088	predicted gene, 70088			1802 bp upstream
Rr372457	regulatory region 372457			37 bp downstream
Rr423469	regulatory region 423469			1813 bp distal
Rr423470	regulatory region 423470			1601 bp distal
Rr423471	regulatory region 423471			within coordinates
Rr423472	regulatory region 423472			177 bp proximal
Tssr10170	transcription start site region 10170			1741 bp downstream
Tssr10171	transcription start site region 10171			1695 bp downstream
Tssr10172	transcription start site region 10172			1686 bp downstream
Tssr10173	transcription start site region 10173			1613 bp downstream
Tssr15148	transcription start site region 15148			1824 bp upstream