rs31579939 SNP Detail

Summary

• ID
  rs31579939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171976432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTG AATTTCTGAC TCATGATTGT
  Y
  GGTGTAGTCT GTAAACAAAC CCGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45129534	mCV23114258	ABI	CRAMUS_MOUSE	f	SNP		C			T		C
ss49753191	NES13042544	PERLEGEN	MM_PANEL2	f	SNP	C		C	T		T	C		T	T		C
ss120006871	PARCsnp_1.17513	PARC_SEQ	INBRED	f	SNP					T		C
ss120009744	PARCsnp_1.07139	PARC_SEQ	INBRED	f	SNP					T		C
ss146182870	ENSMUSSNP5954171	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
ss320122958	CHEV_1_174078996	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs31579939					SNP	C	C	C	T	T	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49753191	NES13042544	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171976432 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1037	CpG island 1037			within coordinates
Dcaf8	DDB1 and CUL4 associated factor 8			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm70088	predicted gene, 70088			878 bp upstream
Rr372457	regulatory region 372457			within coordinates
Rr423469	regulatory region 423469			889 bp distal
Rr423470	regulatory region 423470			677 bp distal
Rr423471	regulatory region 423471			within coordinates
Rr423472	regulatory region 423472			1101 bp proximal
Tssr10170	transcription start site region 10170			817 bp downstream
Tssr10171	transcription start site region 10171			771 bp downstream
Tssr10172	transcription start site region 10172			762 bp downstream
Tssr10173	transcription start site region 10173			689 bp downstream
Tssr15148	transcription start site region 15148			900 bp upstream