rs31580153 SNP Detail

Summary

• ID
  rs31580153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:32351516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGCCTTC ACCTAACTGA
  GAGTGGATTC ATTAGGAACA ATAACTGTAG CTGATTTAGT ATTTCAAAAT AAGGGTCTTA
  GACTGTCAGT TGGCTTTTAA AAGTGTGAAC AGATAATTAC CCTACATGAA CAATGTGCTA
  GAGAGTTTGT TTTGATAAAA ATATCACTCC CGCTGTGTAG CATCACTTAA TAATTGTTTC
  R
  GTATGATGAC ACTCATTCCC CTTTTTATAT TTTTTTTTAT TGTTTCTCGT TTTGTTGATG
  TTATTCAAGT GGTAATTAGC TGCTGCTCTA GAATGGAGGC TGGAAACAAG CACACGTGAA
  GAGAAGATGT GCTCATGGAT GTGTTAGTAA GATCCAACGT TTTGTGAGAA GTCTTTATAA
  CTAACATCTT AAGGATATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39304284	mCV25124504	ABI	CRAMUS_MOUSE	f	SNP		A	G					G	G
ss49442682	NES12613886	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	A	G	G	A	G	G
ss147475668	ENSMUSSNP6885273	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31580153					SNP	A	A	G	G	G	A	G	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49442682	NES12613886	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:32351516 () rs orientation: forward

Symbol	Name	Function Class
Rr313079	regulatory region 313079	1686 bp proximal
Sema5a	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	within coordinates