rs31580405 SNP Detail

Summary

• ID
  rs31580405
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78979792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGATGCCA GAAAGGGTCA
  TCAGATCCCT CTTCACTGCT GAGCCATCTC TCCAGACCCT TTCTGGCTTT TTGAGACGGG
  GTGCTGATAT GTGGCTCGGG CTGACCTAGC TAGCAAAGTA GCCCAGAATG GTCTGACTTG
  AAGTCATGCT TCTTAGTCCT GATGGTTGGC AGTGACTTTC CTTTCCTGGG TGTTAATGGT
  S
  TATGTGTTAC CTTGGTGCCT TGCCCGTAAT CCGGTGCCTG AGCTTGGTGC CTAGTGCAGA
  AGGTGATTGT GGGACAACTT GTGCTCTCTG AGCCAAGGGT GGGAACGGGC GGGATGCTGT
  TTAAACCCAT TGGTTGCCTG GTAACAGAGG ATGCTCACTT GTTTATCCTC CCCCACATTT
  GGAATTCATA AGCACCTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48067135	NES12090888	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31580405					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48067135	NES12090888	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78979792 () rs orientation: forward

Symbol	Name	Function Class
Eif3l	eukaryotic translation initiation factor 3, subunit L	1192 bp downstream
Gm25072	predicted gene, 25072	535 bp upstream
Rr505520	regulatory region 505520	1827 bp distal
Rr505521	regulatory region 505521	1028 bp proximal
Rr505522	regulatory region 505522	1568 bp proximal