rs31580407 SNP Detail

Summary

• ID
  rs31580407
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78979802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG TGTTAATGGT CTATGTGTTA
  M
  CTTGGTGCCT TGCCCGTAAT CCGGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39307642	mCV23260938	ABI	CRAMUS_MOUSE	f	SNP		A	A					C		A
ss48067137	NES12090891	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	C	A		C	A	A	A		C	A	A	C		A
ss148192437	ENSMUSSNP2301636	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss325026304	CHEV_15_78926032	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31580407					SNP	A	A	A	A	A	C	A	C	C	A	A	A	A	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48067137	NES12090891	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78979802 () rs orientation: forward

Symbol	Name	Function Class
Eif3l	eukaryotic translation initiation factor 3, subunit L	1202 bp downstream
Gm25072	predicted gene, 25072	545 bp upstream
Rr505520	regulatory region 505520	1837 bp distal
Rr505521	regulatory region 505521	1018 bp proximal
Rr505522	regulatory region 505522	1558 bp proximal