rs31580411 SNP Detail

Summary

• ID
  rs31580411
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78980108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTTTAAA CCCATTGGTT
  GCCTGGTAAC AGAGGATGCT CACTTGTTTA TCCTCCCCCA CATTTGGAAT TCATAAGCAC
  CTCTCTCTCT CCCACCAATT TGCCTAATTC CTGCAAGCTA TTAATGTAGC CTTATGTGGA
  AGGAGGTCTA TGTGGACAGG TGTTAGAATC TTGGTTATCC AGATGGGCTC TGATCCAGTG
  R
  CGGGGATCTT GCAAGACGCA CAGACATTGG AGTTCCCCAG CTGAGAGCTA CAGAGGCTTT
  CTCTCCTGGA GAGCTGACCT CCATCTTGAT TTCAGGGTTT TGGCTTTCTG AATAATGTGA
  CTTCTGCTCT ACAAGGGAAC TGACTAGGCA CCGCTAGGCA AGGAGGAGGT CCATGTATGG
  AGAAACCAGA TCCTACCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48067141	NES12090896	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31580411					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48067141	NES12090896	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78980108 () rs orientation: forward

Symbol	Name	Function Class
Eif3l	eukaryotic translation initiation factor 3, subunit L	1508 bp downstream
Gm25072	predicted gene, 25072	851 bp upstream
Rr505521	regulatory region 505521	712 bp proximal
Rr505522	regulatory region 505522	1252 bp proximal