rs3158102 SNP Detail

Summary

• ID
  rs3158102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100600178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAA CACAAACCAG AAAAAAGCAA
  R
  TAGAAATACC CTCTTAAAAG GGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45469868	mCV23383867	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss135540405	ENSMUSSNP5358430	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss320849199	CHEV_3_100496785	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3158102					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100600178 () rs orientation: forward

Symbol	Name	Function Class
Gm43464	predicted gene 43464	within coordinates
Rr581888	regulatory region 581888	1218 bp distal
Rr581889	regulatory region 581889	611 bp distal
Rr581890	regulatory region 581890	789 bp distal
Rr581891	regulatory region 581891	4 bp distal
Rr581892	regulatory region 581892	968 bp proximal
Tssr30881	transcription start site region 30881	392 bp downstream