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rs31581048 SNP Detail
Summary
  • ID
    rs31581048
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:100946622 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TCTTG GGCATTCTTA AGAGAAGCCA
    Y
    GTGTCCTTCA GTGCATCCCT CCAAT                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss39304289 mCV25401749 ABI CRAMUS_MOUSE f SNP C C T T
ss148481933 ENSMUSSNP3181876 ENSEMBL ENSEMBL_Sanger f SNP C C T
ss325085118 CHEV_15_100879172 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs31581048 SNP C C T T C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:100946622 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi7763 CpG island 7763 1129 bp distal
Fignl2 fidgetin-like 2 1453 bp downstream
Rr509881 regulatory region 509881 1893 bp distal
Rr509882 regulatory region 509882 854 bp distal
Tmdd1 transmembrane and death domain 1 1344 bp upstream
Tssr136507 transcription start site region 136507 1365 bp upstream
Tssr136508 transcription start site region 136508 1356 bp upstream
Tssr136509 transcription start site region 136509 1337 bp upstream
Tssr136510 transcription start site region 136510 1312 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory