rs31581048 SNP Detail

Summary

• ID
  rs31581048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100946622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG GGCATTCTTA AGAGAAGCCA
  Y
  GTGTCCTTCA GTGCATCCCT CCAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39304289	mCV25401749	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss148481933	ENSMUSSNP3181876	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss325085118	CHEV_15_100879172	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31581048					SNP	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100946622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7763	CpG island 7763	1129 bp distal
Fignl2	fidgetin-like 2	1453 bp downstream
Rr509881	regulatory region 509881	1893 bp distal
Rr509882	regulatory region 509882	854 bp distal
Tmdd1	transmembrane and death domain 1	1344 bp upstream
Tssr136507	transcription start site region 136507	1365 bp upstream
Tssr136508	transcription start site region 136508	1356 bp upstream
Tssr136509	transcription start site region 136509	1337 bp upstream
Tssr136510	transcription start site region 136510	1312 bp upstream