rs31581321 SNP Detail

Summary

• ID
  rs31581321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78980931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAGCTCT TTGCTAATTC
  CAGAGCTAAA GGGTGGAATT CAAAGATGAA CCCAGGTCAG CCCAGTCTTA AAGACTTGTC
  CTGGGACTCA GCCCCACTTC CCGAAGGAAA AAGGCCAAGG GCATTCTCTG CCTTAACAGG
  GAAAGTATCC AAGCGCTTGT AAAACCCTTG GGAATTCTCC AGCCTCTTCA TCTGTGACCT
  Y
  GTAGTAGTGT CAGGCTGGAG TGAGGATCTG CCAGGCTCTG GACTCCCCAT CTTCCTGTCC
  AGTGCTAGTT TCTGACTGGG GGAGGGGCTG TGCTCTGACT CCTTAGTATC TCCTGCTGTT
  CCTCCAGCAG CCCTGGCACT GGGCAAAGGT GACTCCCCTG GGCTAATCTT TTCCCCAACT
  GTTTTTAAAA ATCAGTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48067151	NES12090910	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	T	T	C		C	T	T	T
ss148192457	ENSMUSSNP2843176	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31581321					SNP	C	T	T	T	T	T	C	T	T	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48067151	NES12090910	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78980931 () rs orientation: forward

Symbol	Name	Function Class
Gm25072	predicted gene, 25072	1674 bp upstream
Rr505521	regulatory region 505521	within coordinates
Rr505522	regulatory region 505522	429 bp proximal