rs31584249 SNP Detail

Summary

• ID
  rs31584249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82223393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGTGCGC GCGCCGCTGT
  GCCTCGGGTC TGGTTGGAGT CCTCCGTCCT CCGCCCCAGA GGGCGGGGGT GGTGGCCCGC
  ACTGCCCGTG CTCAGTAAGT AGCTGTGCAG TGAATTCCTA CAGAGGGCGA TACCTTGCTC
  TTTTTTTGTT TGTTTGTTTG TTTGTTTGTT TGTTTTATTT TGTTTTGTTT CTTCGAGACA
  R
  GGTTTCTCTG TGTCCTGGAA CTCATTCTCT AGACGAGGTT GGCCTCGAAC TCAGAAATCC
  ACCTGAAACC TTGCTCTTAA CCACTCGAAA ACGGTAGTGA AAGAGGCTGG GTGGGGTTTC
  AGCTCTCGAA AGGTCAGGAG GCTGCCCCCT CCACCTGACA CCCAAGGGGT TGTTCGCCCA
  CCCACTCCCC AAATGTATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39304670	mCV23873699	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss148231437	ENSMUSSNP2727492	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31584249					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82223393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	within coordinates
Cpgi7420	CpG island 7420	1549 bp proximal
Naga	N-acetyl galactosaminidase, alpha	410 bp upstream
Pheta2	PH domain containing endocytic trafficking adaptor 2	within coordinates
Rr506479	regulatory region 506479	223 bp distal
Rr506480	regulatory region 506480	within coordinates
Rr506481	regulatory region 506481	67 bp distal
Rr506482	regulatory region 506482	1176 bp proximal
Rr506483	regulatory region 506483	1998 bp proximal
Tssr4669	transcription start site region 4669	317 bp upstream
Tssr135543	transcription start site region 135543	401 bp upstream
Tssr135544	transcription start site region 135544	338 bp upstream
Tssr135545	transcription start site region 135545	328 bp upstream