rs31585022 SNP Detail

Summary

• ID
  rs31585022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:91077210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG CCCAGCACAG TTAGGTAGAA
  Y
  GGCTTATTTT AACCTGCTAG TGTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39305628	mCV23823523	ABI	CRAMUS_MOUSE	f	SNP		T				C		T
ss48114201	NES12054994	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T		C	T	T	T		C	T	T		C
ss148352017	ENSMUSSNP853112	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss325061088	CHEV_15_91023438	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31585022					SNP	C	T	C	T	T	C	C	T	T	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48114201	NES12054994	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:91077210 () rs orientation: forward

Symbol	Name	Function Class
Abcd2	ATP-binding cassette, sub-family D member 2	1208 bp upstream
Rr507988	regulatory region 507988	718 bp distal
Tssr135947	transcription start site region 135947	1606 bp upstream
Tssr135948	transcription start site region 135948	1575 bp upstream
Tssr135949	transcription start site region 135949	1552 bp upstream
Tssr135950	transcription start site region 135950	1482 bp upstream
Tssr135951	transcription start site region 135951	1285 bp upstream
Tssr135952	transcription start site region 135952	1182 bp upstream
Tssr135953	transcription start site region 135953	980 bp upstream
Tssr135954	transcription start site region 135954	957 bp upstream