rs31585125 SNP Detail

Summary

• ID
  rs31585125
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100574188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTAGA CAGGGCCTTG
  AGGGGCCTGG AGAGTTGATC CAGTAGTTAA GGTCTTGCAG AGAATCCAGG TTCTGTTCCC
  AGCACCCACA TGGCGGGTTC CAACTGTCTT AATTCTGGGT CAAGGGGATC TATGCCCTTC
  TCCGGCCTCT GCTGGTGCCA GGCACACCCA CAATGCCACA TTTACTTTTA ATTAAAAAAA
  W
  TTTTTGAGGC ATGAACCTCC ATACCTGGCT AATTTAATTT TTAATTTTTA ATTTGGTGTA
  TGTGCCTGAA GAGGCCAAAG AAAGTCTGAT CCTCTGGGTC TGGAGTTACA GGAGCTGGTA
  GCTTGTAAGC AGCCTGATGT AGGTGCTGGG AACTGAACTC TGGCTCTCTG GGATAGCAGG
  AAACACTTCA TGGCTGAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39305074	mCV22765584	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss148477509	ENSMUSSNP1743839	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31585125					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100574188 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Rr509795	regulatory region 509795	1893 bp distal
Rr509796	regulatory region 509796	635 bp proximal
Tssr4720	transcription start site region 4720	1840 bp upstream
Tssr4721	transcription start site region 4721	733 bp upstream
Tssr133153	transcription start site region 133153	1876 bp downstream
Tssr133154	transcription start site region 133154	1674 bp downstream
Tssr136461	transcription start site region 136461	1811 bp upstream
Tssr136462	transcription start site region 136462	1719 bp upstream
Tssr136463	transcription start site region 136463	1689 bp upstream
Tssr136464	transcription start site region 136464	1648 bp upstream
Tssr136465	transcription start site region 136465	1625 bp upstream
Tssr136466	transcription start site region 136466	1590 bp upstream
Tssr136467	transcription start site region 136467	1587 bp upstream
Tssr136468	transcription start site region 136468	945 bp upstream
Tssr136469	transcription start site region 136469	905 bp upstream
Tssr136470	transcription start site region 136470	893 bp upstream
Tssr136471	transcription start site region 136471	871 bp upstream
Tssr136472	transcription start site region 136472	860 bp upstream
Tssr136473	transcription start site region 136473	1777 bp downstream
Tssr136474	transcription start site region 136474	1807 bp downstream
Tssr136475	transcription start site region 136475	1866 bp downstream