rs31587285 SNP Detail

Summary

• ID
  rs31587285
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:30238235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTGCTCT CTCTGGCAGC
  TGAGCCGTGT TACCTCTAAT CCCAGTGGTG CCTTCTGTAT ATAAATACAT ATCCAGTCCT
  TACCCCGAGT GCTTCTAAAT CATGGACAGT CTGTACTTGT CATTTCACTA AAATTGCCAG
  GTGACTCAGA TACCCACCAA GGTGTCAGAA CCAGTATTCT AGTGCATACA ACATCTGTCA
  S
  AGAAACAGTG CACTTCAGTT TTTTAAAGGG TAGGTAGGGG AAGCGAAACA TGTAGATTTA
  GGAACGGAGG AAAATTTCAC AAAACATAGA GGTCAGCCTA GGGACTGTAG TTTAGTGCAG
  GTAGAAGTAT GTTATCGGGA AACTGATAAT CACCACTGTT CTTTTGAAAT CCTGGAAAGG
  GCAAATCCTT TAGGAAGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39305341	mCV22996755	ABI	CRAMUS_MOUSE	f	SNP		C	G					G		G
ss49433158	NES12619227	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	C	G		G	G	G	C	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31587285					SNP	C	C	G	G	G	C	G	G	G	G	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49433158	NES12619227	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:30238235 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd2	catenin delta 2	Intron
D15Mit249	DNA Segment, Chr 15, Massachusetts Institute of Technology-249	1264 bp proximal