rs31587929 SNP Detail

Summary

• ID
  rs31587929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78139573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAG CGGCAAGAGC AACCAACCAT
  R
  ACTAGTGGCT GCGCATAATC TTTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39305458	mCV27572935	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss148180918	ENSMUSSNP3148904	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss325024239	CHEV_15_78085803	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31587929					SNP	A	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78139573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7285	CpG island 7285	355 bp distal
Ncf4	neutrophil cytosolic factor 4	within coordinates
Rr505234	regulatory region 505234	388 bp distal
Rr505235	regulatory region 505235	1055 bp proximal
Tssr131906	transcription start site region 131906	479 bp downstream