rs31588044 SNP Detail

Summary

• ID
  rs31588044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118438335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGAGGAG AGAATGAATA
  GGCTGAGAGA GACCTCTGGA TTTCATCCGT GCATCAAGAA GTACTCACCA GGGAGACCTG
  CTCCCATCAA GTACATAGGA AGAAGCCTCA GAGAAAACCC AATGTAGCCG GTTGGTTCTG
  GACCATATGG AAGTGTTGAG AACAGCAGGG GAAGAGAGAA GGACCATGGT GGTAAATTCA
  Y
  TCCAGGGAGC AAGCTGAAAA GAAAATGTTT TGGGGAGGGG GGAAATTTTG GAGGTGATTT
  GGAGAACCCC AGAGAAAGGA CCTAAGTATG CCAAAAAGAA CCTTGGTGAC AGATGTAGCA
  GGAAATGAAG CAGGAGCTGC AGGTTTCTCT GTCTTCGCTC TACTCAGCTC ACAGTGCAAA
  GCTATGAGTT AGAAGGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47568664	NES11190180	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31588044					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47568664	NES11190180	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118438335 () rs orientation: forward

Symbol	Name	Function Class
Gm45776	predicted gene 45776	974 bp upstream
Gm63722	predicted gene, 63722	within coordinates
Hsd17b2	hydroxysteroid (17-beta) dehydrogenase 2	within coordinates