rs3159031 SNP Detail

Summary

• ID
  rs3159031
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64126998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGT TCCTGTTTGG GAAGGCAGGC
  K
  TCTCACAGAG CCCACGGACC TGGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss47414922	NES11045977	PERLEGEN	MM_PANEL2	f	SNP		T	G	G	T	T	T		T	T		T
ss149161588	ENSMUSSNP278502	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T				T
ss319744731	CHEV_1_64134413	CHEVERUD	SCREENING_POP	f	SNP								T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs3159031					SNP	T	T	G	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47414922	NES11045977	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64126998 () rs orientation: forward

Symbol	Name	Function Class
Gm13748	predicted gene 13748	within coordinates
Klf7	Kruppel-like transcription factor 7 (ubiquitous)	within coordinates
Rr886	regulatory region 886	within coordinates
Rr366923	regulatory region 366923	77 bp upstream
Rr371417	regulatory region 371417	921 bp upstream
Tssr7078	transcription start site region 7078	351 bp upstream