rs31590742 SNP Detail

Summary

• ID
  rs31590742
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149696777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAC CAAGTACAGC TGCTGCAGCA
  M
  AAGGTACAAC CTTGGCTATC TCTGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45049694	mCV24644460	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A	C
ss145699119	ENSMUSSNP6602157	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		C
ss320042534	CHEV_1_151668156	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31590742					SNP	A	A	C	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149696777 () rs orientation: forward

Symbol	Name	Function Class
Rr372218	regulatory region 372218	1654 bp upstream