rs31591745 SNP Detail

Summary

• ID
  rs31591745
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99507580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGACATATC ATGAAAAAAT TAAAAGAAAC CAAAAAAAAA
  AAAAAAACCC TTAAAAACTT TAAAGGCCAA GGAACTCTTT GGGCTCTGTA GCAACACGCG
  W
  GGATGATGGT GGAAGGGTTT GGGGAATACT GACTTCGAGG AGATTCTTTC AATTTCTTTA
  GAAGTTCCAT TTTCCACGTT GATGTTATGG GCATTTTCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46048230	mCV24185509	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss145517533	ENSMUSSNP2255544	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31591745					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99507580 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	135 bp proximal
Rr400465	regulatory region 400465	455 bp upstream
Rr652012	regulatory region 652012	516 bp proximal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	686 bp upstream
Tssr68078	transcription start site region 68078	750 bp upstream
Tssr73711	transcription start site region 73711	70 bp upstream
Tssr73712	transcription start site region 73712	499 bp downstream
Tssr73713	transcription start site region 73713	537 bp downstream
Tssr73714	transcription start site region 73714	619 bp downstream
Xrra1	X-ray radiation resistance associated 1	845 bp upstream