rs31591840 SNP Detail

Summary

• ID
  rs31591840
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35284893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGCCTCCA GCCCTGATGC
  CAGCCTTGAG CAGGGCGGAC TGAAAGCTCC TCATGTCCTC GCCGCTGTTC TCAACAGAGC
  TCTCCAGGGA CCCTTGAGGT GCGCCTCCGG CGTCCCCACG GCTGGGGTAG TCTGGTTAGC
  TTCTCCCCAT CCGCTCCTCC ATTTCCCCCA GACGCGCTCC GGGTCACGCG TAGTGTCTTT
  K
  CACCACTTTC TTTTTCACGG CGGCTCCCTG AGAAGCCCAG AGTGAAGACC CCATCCTTGA
  TCGACCCCAA GTCTCCAAGA CGAGCCGCGC GCCTTAGCCC CGGCCAAGGG CAGCAGGATC
  CAGTTTCCTA GGACACGCCT CCAGCCACCA GTCCAGGCCC GGGGCTTCCT CCGCCCGCCC
  CCCCCGCCCC CTCCCCGCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46048303	mCV23682733	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss148813197	ENSMUSSNP5089222	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31591840					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35284893 () rs orientation: forward

Symbol	Name	Function Class
Ankrd27	ankyrin repeat domain 27	776 bp upstream
Cpgi18874	CpG island 18874	within coordinates
Gm73899	predicted gene, 73899	714 bp downstream
Rgs9bp	regulator of G-protein signalling 9 binding protein	within coordinates
Rr167549	regulatory region 167549	within coordinates
Rr400265	regulatory region 400265	561 bp upstream
Tssr65908	transcription start site region 65908	764 bp upstream
Tssr65909	transcription start site region 65909	827 bp upstream
Tssr72043	transcription start site region 72043	73 bp downstream
Tssr72044	transcription start site region 72044	84 bp downstream
Tssr72045	transcription start site region 72045	109 bp downstream
Tssr72046	transcription start site region 72046	1469 bp downstream