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rs31591840 SNP Detail
Summary
  • ID
    rs31591840
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr7:35284893 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTCGCCTCCA GCCCTGATGC
    CAGCCTTGAG CAGGGCGGAC TGAAAGCTCC TCATGTCCTC GCCGCTGTTC TCAACAGAGC
    TCTCCAGGGA CCCTTGAGGT GCGCCTCCGG CGTCCCCACG GCTGGGGTAG TCTGGTTAGC
    TTCTCCCCAT CCGCTCCTCC ATTTCCCCCA GACGCGCTCC GGGTCACGCG TAGTGTCTTT
    K
    CACCACTTTC TTTTTCACGG CGGCTCCCTG AGAAGCCCAG AGTGAAGACC CCATCCTTGA
    TCGACCCCAA GTCTCCAAGA CGAGCCGCGC GCCTTAGCCC CGGCCAAGGG CAGCAGGATC
    CAGTTTCCTA GGACACGCCT CCAGCCACCA GTCCAGGCCC GGGGCTTCCT CCGCCCGCCC
    CCCCCGCCCC CTCCCCGCCC                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
ss46048303 mCV23682733 ABI CRAMUS_MOUSE f SNP G T G G
ss148813197 ENSMUSSNP5089222 ENSEMBL ENSEMBL_Sanger f SNP G T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
rs31591840 SNP G T G G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:35284893 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ankrd27 ankyrin repeat domain 27 776 bp upstream
Cpgi18874 CpG island 18874 within coordinates
Gm73899 predicted gene, 73899 714 bp downstream
Rgs9bp regulator of G-protein signalling 9 binding protein within coordinates
Rr167549 regulatory region 167549 within coordinates
Rr400265 regulatory region 400265 561 bp upstream
Tssr65908 transcription start site region 65908 764 bp upstream
Tssr65909 transcription start site region 65909 827 bp upstream
Tssr72043 transcription start site region 72043 73 bp downstream
Tssr72044 transcription start site region 72044 84 bp downstream
Tssr72045 transcription start site region 72045 109 bp downstream
Tssr72046 transcription start site region 72046 1469 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory