rs31592018 SNP Detail

Summary

• ID
  rs31592018
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43086553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAGGCTTC TGCAGGGCCC ACCCCTACCA CATAGGAGGA
  GAGGAGCCAA TCGAAGAGGG GAGGCCAAAC CACTCAGGAA GGGAGGGGGT AGGGAAGGTG
  W
  GAGAAGAATC AGATCAGACA GAGGACTCCT GGACAAAGCC GCTGCTTGCT AGCTGCTTCT
  CTGGCTCAGA AGACGAGGAA TTCGGGTGCA TGGCCTTTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46047863	mCV22666141	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss149072670	ENSMUSSNP551548	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31592018					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43086553 () rs orientation: forward

Symbol	Name	Function Class
Gm52993	predicted gene, 52993	1138 bp downstream
Lim2	lens intrinsic membrane protein 2	1133 bp downstream
Nkg7	natural killer cell group 7 sequence	9 bp upstream
Tssr2210	transcription start site region 2210	110 bp downstream
Tssr65999	transcription start site region 65999	148 bp downstream
Tssr66000	transcription start site region 66000	3 bp upstream
Tssr66001	transcription start site region 66001	457 bp upstream
Tssr66002	transcription start site region 66002	471 bp upstream