rs31592693 SNP Detail

Summary

• ID
  rs31592693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16680631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCCAACGAGG AATCGGACGA GGATTCAGAC ACAGAGTCAG AGGGAGATTC
  Y
  GAGGACACTG ACAGCGAAGA GTCCGAACCT GGTGACAGCG TGTCCAAGAA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46048248	mCV23532539	ABI	CRAMUS_MOUSE	f	SNP		T	C						C
ss51882283	NES14893970	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	T	T	C	C	C	T	C	T	C	C
ss148400057	ENSMUSSNP1770525	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31592693					SNP	T	T	C	C	C	T	T	T	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51882283	NES14893970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16680631 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	941 bp distal
Cpgi18407	CpG island 18407	within coordinates
Gm71929	predicted gene, 71929	1053 bp upstream
Pnma8b	PNMA family member 8B	within coordinates
Rr642824	regulatory region 642824	563 bp distal
Tssr64660	transcription start site region 64660	1986 bp downstream
Tssr64661	transcription start site region 64661	938 bp downstream
Tssr70792	transcription start site region 70792	1049 bp upstream