rs31594376 SNP Detail

Summary

• ID
  rs31594376
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24097304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACTTAAAT TCAGTCCCCA ATACCCTACC TCAAATGTAT
  GAATGCTGAA ACCTTAACTA AAGGCCCAGT GAGGTGGCCT GCTGGGTAAA GGCGCTTGGG
  R
  CCCATGGGAT AGAAGGACAG TGCTGATTCT TGCTGACTCC TCTGGCATCC AAATGTGCAT
  TGCTGCATGT GTGCGCACAC ATCCTAGAGG GCACACATC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46049387	mCV25416667	ABI	CRAMUS_MOUSE	f	SNP		G	A
ss148598548	ENSMUSSNP3155903	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss322120419	CHEV_7_25182898	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31594376					SNP	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24097304 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	1307 bp proximal
Gm74022	predicted gene, 74022	1132 bp downstream
Rr643435	regulatory region 643435	496 bp distal
Rr643436	regulatory region 643436	349 bp proximal
Rr643437	regulatory region 643437	1250 bp proximal
Rr643438	regulatory region 643438	1751 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	1802 bp upstream
Tssr64959	transcription start site region 64959	1727 bp upstream
Tssr64960	transcription start site region 64960	1795 bp upstream
Tssr64961	transcription start site region 64961	1934 bp upstream
Tssr71075	transcription start site region 71075	1979 bp downstream