rs31594606 SNP Detail

Summary

• ID
  rs31594606
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:77041390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCAAGCT AACGCTTCCA
  GAGGCAGAGC AGCGGCAGCA ATAGCAGCAG CATCGTGTGA AGCAGCCAGA GCAAGAGCAG
  CTTCTGAAGG AGGAAGGCCA GATCTGGCTG GGAGTCATGA AAGTGCAGAG ATGGAGTTGT
  AGACCTGCAG GCTGGGGACA GTGTCTAGCC CAGGCAGGGC CAGGGTACAA AGCACGGGGG
  K
  CGGGGGGGGG GGGGGGGACC AGCTTGTCCT AGCAGAGATG ATTCTGTCCT TGACTTGTTG
  GATGCAGGCT CAGTGGCGAA TGTGGCTGGG AGCACAGAGA ATCCTTCTAT GGGCTGTGGC
  TCCGTAGGGG GAGGGCCTTC TTCATGGCTC CCCATGGTAG ATCCTGGGGA GAAGAGCCAT
  TCCATGGTTC TAAATAAGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45049535	mCV23073449	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs31594606					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:77041390 () rs orientation: forward

Symbol	Name	Function Class
Gm70876	predicted gene, 70876	within coordinates
Tfdp1-ps	transcription factor Dp 1, pseudogene	1117 bp upstream
Tssr7562	transcription start site region 7562	1113 bp upstream