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rs3159462 SNP Detail
Summary
  • ID
    rs3159462
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:100320200 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCCGTGGATG ATAATTATGA
    CTCAGGATTT AGTGCAAAAT AGTTCTGTGG CTCTCTACTA GATTTATTCT TATATTAAGT
    TTTTTCTTGT TCATATGTTA TTTCATTTAA AAAATTAAGC TTTACATTAA AATGTGTTAT
    TCAGTCATCC ATGAGCAAAG ACAGATGGAT ATATTCTACT GTTCATCaaa aataaatata
    Y
    aaaaattaat tCCGATGAAA TTAATTAGAA CTGTGTAGAA GTTACAAAAA CAGACGTTGC
    CAAGCTCTAA ATTCATCGCT GCATGAAGCC AGAACTTGTC TAAGTTTATT TTCCTTTTTA
    CATATCAATA TAACAAAAAA CTGTTACTTT TATTTATCAT AATATACTAT TTGTTTTATT
    TTGCACTTTA CTTATTTGTC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
ss135539244 ENSMUSSNP3556457 ENSEMBL ENSEMBL_Sanger f SNP C C T
ss320848706 CHEV_3_100216807 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
rs3159462 SNP C C T C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:100320200 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm12464 predicted gene 12464 676 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory