rs3159526 SNP Detail

Summary

• ID
  rs3159526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100323518 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGCTT TCTCAATAAC TAGTTAGAAG
  Y
  TTCTGCAGAT GCTTGCTGGT TCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45419692	mCV23822186	ABI	CRAMUS_MOUSE	r	SNP	A	A	A	A	G
ss135539311	ENSMUSSNP411716	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	A		G
ss320848738	CHEV_3_100220125	CHEVERUD	SCREENING_POP	r	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3159526					SNP	T	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100323518 () rs orientation: reverse

Symbol	Name	Function Class
Gm12464	predicted gene 12464	1627 bp downstream
Gm32471	predicted gene, 32471	1679 bp upstream
Rr581844	regulatory region 581844	1526 bp proximal
Rr581845	regulatory region 581845	1690 bp proximal