rs31596308 SNP Detail

Summary

• ID
  rs31596308
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19294515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAA GCGCTGGGCT CACAGCTGCA
  S
  ACAGCCACAC CAGGTTTCTT AACCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46048911	mCV25052330	ABI	CRAMUS_MOUSE	f	SNP	C	G		C
ss48163324	NES11822848	PERLEGEN	MM_PANEL2	f	SNP		G	C	C	G		C	G	C	C
ss148478814	ENSMUSSNP164461	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		C
ss322117450	CHEV_7_20145939	CHEVERUD	SCREENING_POP	f	SNP						G					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31596308					SNP	C	G	C	C	G	G	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163324	NES11822848	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19294515 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18499	CpG island 18499			547 bp proximal
Ppp1r37	protein phosphatase 1, regulatory subunit 37			Intron
				Noncoding-Transcript-Variant
Rr643186	regulatory region 643186			1766 bp distal
Rr643187	regulatory region 643187			1326 bp distal
Rr643188	regulatory region 643188			1896 bp proximal
Tssr70928	transcription start site region 70928			1532 bp downstream
Tssr70929	transcription start site region 70929			1578 bp downstream
Tssr70930	transcription start site region 70930			1611 bp downstream
Tssr70931	transcription start site region 70931			1787 bp downstream
Tssr70932	transcription start site region 70932			1822 bp downstream