rs31596396 SNP Detail

Summary

• ID
  rs31596396
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105840243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAT TAAACCCAGA TCTCCATGAA
  M
  GGGAGGCAAG CACTCTACCA AGCGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J
ss45550812	mCV23787394	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss135578668	ENSMUSSNP6356629	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J
rs31596396					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105840243 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	263 bp upstream
Rr582817	regulatory region 582817	274 bp distal
Rr582818	regulatory region 582818	within coordinates
Tssr34937	transcription start site region 34937	1650 bp upstream
Tssr34938	transcription start site region 34938	305 bp upstream
Tssr34939	transcription start site region 34939	297 bp upstream
Tssr34940	transcription start site region 34940	280 bp upstream
Tssr34941	transcription start site region 34941	248 bp upstream
Tssr34942	transcription start site region 34942	216 bp upstream