rs31596485 SNP Detail

Summary

• ID
  rs31596485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37721463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAT AGATTATAAA TTGTGTGTGG
  Y
  TCAACATCAA GGTATTAATC AAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45549858	mCV25186212	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss134810562	ENSMUSSNP3101902	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320711615	CHEV_3_37566236	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31596485					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37721463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13101	CpG island 13101	1691 bp proximal
Rr575535	regulatory region 575535	within coordinates
Rr575536	regulatory region 575536	301 bp proximal
Tssr28922	transcription start site region 28922	1501 bp upstream