rs31596554 SNP Detail

Summary

• ID
  rs31596554
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:165560093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCTGTTG GTGGGCCAGC
  TCTCTGTGGT TCGGACAGCT GGTTTGGTCT CTGGTCCAGC CAGGAGTCTC TGCCTGTGTT
  TGCCTACCTA TTTTTCTGGC GTGCTTGGCC TATAACTGCT TTTCAAACTG CCCTGGCCTG
  CACCTGTTCT TCTGACTGGC ATGACATGGA GGAGTTCTGT GTAGTGGAAA TCCACCCAAG
  W
  TGGGGCCAAG GTCACAGTGG TGGGGTGGGG TGTGGGACAG GGTGGGGCTT GAGTGGCGGT
  CAACTGTGCC TTTGGATACT GAATCTAGGG AGTGGGGCAG TTCAGCTGGC AGCTGGGTCA
  TTCACCCTGT TCTTCAAGTT GTGTGGCCTG AGCAGTGAAG TTTTGCCTGA GTTAGGGCCA
  GGGGTCTGGC AGCTGAGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47069217	NES11139363	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31596554					SNP	A	A	A	A	A	A	T	A	A	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47069217	NES11139363	PERLEGEN	MM_PANEL	f	SNP	A/T