rs31596556 SNP Detail

Summary

• ID
  rs31596556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:165560174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTACCTAT TTTTCTGGCG
  TGCTTGGCCT ATAACTGCTT TTCAAACTGC CCTGGCCTGC ACCTGTTCTT CTGACTGGCA
  TGACATGGAG GAGTTCTGTG TAGTGGAAAT CCACCCAAGA TGGGGCCAAG GTCACAGTGG
  TGGGGTGGGG TGTGGGACAG GGTGGGGCTT GAGTGGCGGT CAACTGTGCC TTTGGATACT
  R
  AATCTAGGGA GTGGGGCAGT TCAGCTGGCA GCTGGGTCAT TCACCCTGTT CTTCAAGTTG
  TGTGGCCTGA GCAGTGAAGT TTTGCCTGAG TTAGGGCCAG GGGTCTGGCA GCTGAGTGGG
  CAATGGGGCA GGATTGAGGG AAAGGGGAGG TAGTAGAATG GGTCTTTGAG AACTGAGATC
  TAGGATTTAG GGGGAGGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47069220	NES11139364	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31596556					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47069220	NES11139364	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:165560174 () rs orientation: forward

Symbol	Name	Function Class
Rr5702	regulatory region 5702	1827 bp proximal