rs31596864 SNP Detail

Summary

• ID
  rs31596864
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87825234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG CAGAGGCAGG CGGATTTCTG
  M
  GTTCTAGACC TGGTCTGAGT TGAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45549965	mCV23484222	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss320835503	CHEV_3_87721849	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31596864					SNP	C	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87825234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13346	CpG island 13346	1428 bp proximal
Gm64606	predicted gene, 64606	498 bp downstream
Hdgf	heparin binding growth factor	1795 bp downstream
Mrpl24	mitochondrial ribosomal protein L24	1579 bp upstream
Rr367453	regulatory region 367453	1326 bp upstream
Rr579572	regulatory region 579572	727 bp distal
Rr579573	regulatory region 579573	1039 bp proximal
Rr579574	regulatory region 579574	1466 bp proximal
Rr579575	regulatory region 579575	1647 bp proximal
Tssr29862	transcription start site region 29862	1563 bp upstream
Tssr29863	transcription start site region 29863	1588 bp upstream
Tssr29864	transcription start site region 29864	1601 bp upstream
Tssr29865	transcription start site region 29865	1640 bp upstream
Tssr29866	transcription start site region 29866	1733 bp upstream
Tssr29867	transcription start site region 29867	1766 bp upstream