rs3159704 SNP Detail

Summary

• ID
  rs3159704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100939913 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGTG AGTTTACTGA GGCTTCTTGG
  R
  TAAGGGTGCA GGTGCAGAGA TGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45526841	mCV24922911	ABI	CRAMUS_MOUSE	r	SNP	C	C	C					C		T
ss46810394	NES10727295	PERLEGEN	MM_PANEL2	r	SNP	C		C	C	C	T	C		T	T	C	C		T	T	C	T		C
ss135543892	ENSMUSSNP4835296	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	C							T
ss320850677	CHEV_3_100836520	CHEVERUD	SCREENING_POP	r	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3159704					SNP	G	G	G	G	G	A	G	G	A	A	G	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46810394	NES10727295	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100939913 () rs orientation: reverse

Symbol	Name	Function Class
Gm66113	predicted gene, 66113	within coordinates
Rr375455	regulatory region 375455	within coordinates
Rr581946	regulatory region 581946	837 bp distal