rs31597074 SNP Detail

Summary

• ID
  rs31597074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45112279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAAGGATA CCTAGCTTAG ATCATTGTCT GAATGCCCGG
  GGGCACCTCT GTGCTGACCC TTAGATCTGA AAAAGTGGCT CTCAACCTTT TAGTTCATGA
  Y
  CCCAGAGGGG TCACGTATCA AATATTTACA TTATGATTCA TAACAGCAGC AAAATTACAG
  TTATGAAGTA GCAATGAAAT AACTTTATAG GGCTGGCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46048717	mCV22696785	ABI	CRAMUS_MOUSE	f	SNP	C		C	T	C
ss149135566	ENSMUSSNP3836934	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31597074					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45112279 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	Intron
Gm73429	predicted gene, 73429	1392 bp upstream
Gm73431	predicted gene, 73431	1205 bp downstream
Rr380754	regulatory region 380754	1423 bp downstream
Rr646452	regulatory region 646452	1836 bp distal
Rr646453	regulatory region 646453	1403 bp distal
Rr646454	regulatory region 646454	906 bp distal
Rr646455	regulatory region 646455	184 bp proximal
Tssr66542	transcription start site region 66542	1755 bp downstream
Tssr72399	transcription start site region 72399	1909 bp upstream
Tssr72400	transcription start site region 72400	1878 bp upstream