rs31597417 SNP Detail

Summary

• ID
  rs31597417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118529014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGCCCCG CCCTAGTGCT
  CGGAGCTGCT TCTGGCTTCT CCAGCTCCCG GAGCGCGTCT CTCCGCAAAG AGCTGTGGTA
  AGAGCTCGGG CCACCGCGGG GCGACTGCGA TTCAGGGTCC CAGGGCTAAA CTCAGGAAAG
  GCGGATTAAG GGGAGGACGC TGGAGCTGTA GGCGGGGCCT CCACGACACC CGAGGACTCC
  Y
  TAACGACCCG GTCTGGAAGT TCCTTGCTGA GGTCCTAGCT GAGGCCGCTG AGGTTGCTGC
  CAGAGTTTAA AAGTTTTAAA AATACGAATG GTGGCTTTCT ATGAAGCGTG TTTTCTAGAA
  CTCTCAGTAG CCCTGAGCCG CTGGTGTCGC TATGCTCTGT CCCAGAGTGA AGGAGGTGGT
  CACAAACCCA GGCTGCGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47569339	NES11185679	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31597417					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47569339	NES11185679	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118529014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21106	CpG island 21106	within coordinates
Gm10617	predicted gene 10617	within coordinates
Gm63781	predicted gene, 63781	1368 bp upstream
Mphosph6	M phase phosphoprotein 6	332 bp upstream
Rr401163	regulatory region 401163	130 bp downstream
Tssr83111	transcription start site region 83111	326 bp upstream
Tssr83112	transcription start site region 83112	302 bp upstream