CCCGGTCTGG AAGTTCCTTG CTGAGGTCCT AGCTGAGGCC GCTGAGGTTG CTGCCAGAGT TTAAAAGTTT TAAAAATACG AATGGTGGCT TTCTATGAAG CGTGTTTTCT AGAACTCTCA GTAGCCCTGA GCCGCTGGTG TCGCTATGCT CTGTCCCAGA GTGAAGGAGG TGGTCACAAA CCCAGGCTGC GTGATAGCTG Y AGGGCTGCAC ACAAACCGTG GAAGACTGAT GAATATGCAT ACACCTGTTC GCTGTGCATC TTGGAGCCTG AAGGATTTCC TTCTGGAATG GGAAGAATGG CAGGAACTAG CAAGAGCTGT ACGCAAGGCG ACAACTTGTG AAGGGGCCAG GGGTGGTTTA ATGGGTGAAA ACACTTGCTG CCAAGCCCGA GGAGGACATG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47569342 | NES11185682 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | T | T | T | C | T | T | C | T |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs31597419 | SNP | T | T | T | T | T | T | T | T | T | C | T | T | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47569342 | NES11185682 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr8:118529221 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi21106 | CpG island 21106 | within coordinates | ||||||
Gm10617 | predicted gene 10617 | within coordinates | ||||||
Gm63781 | predicted gene, 63781 | 1161 bp upstream | ||||||
Mphosph6 | M phase phosphoprotein 6 | 539 bp upstream | ||||||
Rr401163 | regulatory region 401163 | 337 bp downstream | ||||||
Tssr83111 | transcription start site region 83111 | 533 bp upstream | ||||||
Tssr83112 | transcription start site region 83112 | 509 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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