rs31597689 SNP Detail

Summary

• ID
  rs31597689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101249110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTGGGA CAAGTCAGGT
  TTTCTGAACC CTGGATTTCT CACTGGCCTG AGTTCTCTGA GGAGGTGTCC AGTATTGCCC
  TCTTCCTTCT CCTCCTCTTC CTTCTCCTCC TCTTCCTCCT CACCTCCCTC CTCAGTTCCC
  CATCCTGTTG GTTCTAATGT ATACTCTGGG GCTCAAGATT ACCTCCTTCT CTGATACATC
  R
  GCTCAACCAC AGAGCACACT GCCTGGAACT TGTCAACCCT TGGATGGACA GAGAACGCCT
  AGAGAAGCAG CAGCCAGCAA GGGGGGGCAG GGGCCTATGC TTCTCTGATG TGTTCTAAAC
  ACACCTCATC CTGAAAATGG ATCCTAATAG CTATTTCTAA CCCAGGGCAC ATCACACCTG
  TCTCTTTCCT GGTGTTCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45551229	mCV23815955	ABI	CRAMUS_MOUSE	f	SNP		G	A				G		G
ss46813715	NES10712526	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G		G	G	G	G	G	G	G	G	G
ss135546646	ENSMUSSNP3881713	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31597689					SNP	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813715	NES10712526	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101249110 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	within coordinates
Rr582012	regulatory region 582012	880 bp proximal
Rr582013	regulatory region 582013	1667 bp proximal