rs31597972 SNP Detail

Summary

• ID
  rs31597972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122523068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGATCACCG GGACTTTACC TTCTCTTACT TTATTAGAAA
  GGCCACCAGG TAAGAAGAGG AGCCACAAAG GACACAGCCA GGGACATGAA GCGTGACCTG
  R
  GGCTGATCTC TCTCCCCCAC CATTGAATTT TCCCCTCGAT CCAACATTAA ACAATCCCCG
  TTCCCAGGCC CTTTGCTTCG GAAGTAGCTT CTCGGTCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45551340	mCV23975497	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss320914169	CHEV_3_122432337	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31597972					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122523068 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	within coordinates
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Rr584392	regulatory region 584392	462 bp distal
Rr584393	regulatory region 584393	476 bp distal
Rr584394	regulatory region 584394	within coordinates
Rr584395	regulatory region 584395	162 bp proximal
Rr584396	regulatory region 584396	1043 bp proximal
Tssr31509	transcription start site region 31509	424 bp downstream
Tssr31510	transcription start site region 31510	404 bp downstream
Tssr31511	transcription start site region 31511	285 bp downstream
Tssr31512	transcription start site region 31512	237 bp downstream
Tssr31513	transcription start site region 31513	186 bp downstream
Tssr31514	transcription start site region 31514	290 bp upstream
Tssr31515	transcription start site region 31515	431 bp upstream
Tssr31516	transcription start site region 31516	451 bp upstream
Tssr31517	transcription start site region 31517	499 bp upstream
Tssr31518	transcription start site region 31518	628 bp upstream
Tssr31519	transcription start site region 31519	694 bp upstream
Tssr31520	transcription start site region 31520	717 bp upstream
Tssr31521	transcription start site region 31521	797 bp upstream
Tssr31522	transcription start site region 31522	833 bp upstream