rs31598223 SNP Detail

Summary

• ID
  rs31598223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118530125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGGGCTTT TCAAGAGACA ACCTTTAGGA CGAACCCACA
  TCCAGTGTGG CTGGTAGCCT TTCTTCCCCT GTGCTGTAGA CGAAACCTAC AGCCACACAC
  Y
  AAGCTTACCA CTTAGCTAAA TCTTCAGCCT CCTGTCATAA GATGAAAACT TCTGAGTGCA
  CCAGAGGTGT GTGTGCTAAA AGAAAGACCA TTTACACGCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47569360	NES11185547	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31598223					SNP	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47569360	NES11185547	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118530125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21106	CpG island 21106	607 bp distal
Gm10617	predicted gene 10617	152 bp downstream
Gm63781	predicted gene, 63781	257 bp upstream
Mphosph6	M phase phosphoprotein 6	1443 bp upstream
Rr401163	regulatory region 401163	1241 bp downstream
Tssr83111	transcription start site region 83111	1437 bp upstream
Tssr83112	transcription start site region 83112	1413 bp upstream