rs31599159 SNP Detail

Summary

• ID
  rs31599159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:30736204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGCCCCCCA AGGCTGGACC AGCTGCTCAG CCCAGGCGGG
  TCCCTCTTTT GGACCTCCGC TAACAACCCG AGAGCAGGGG ACAGGATTAC ACCGACTTTG
  Y
  CCCTCCAGCC TAGAGATACT TATTTAAAAT ATCCTGAACA TCCTCTCTAC TTTTGGACCA
  AAAAATAGCG GGGCATTCTC TTCTTAATTC TAATTTAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46049044	mCV22838212	ABI	CRAMUS_MOUSE	f	SNP		C	T						C
ss60989534	NES16136143	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	C	T	T		C	T	C	C		T
ss148696871	ENSMUSSNP6590867	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss322138595	CHEV_7_31821798	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31599159					SNP	C	C	T	T	T	T	T	C	C	T	T	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989534	NES16136143	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30736204 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	Intron
Gm38984	predicted gene, 38984	64 bp upstream
Gm71772	predicted gene, 71772	210 bp upstream
Rr644979	regulatory region 644979	1700 bp distal
Rr644980	regulatory region 644980	1755 bp distal
Rr644981	regulatory region 644981	120 bp proximal
Rr644982	regulatory region 644982	221 bp proximal
Tssr2191	transcription start site region 2191	1294 bp upstream
Tssr65830	transcription start site region 65830	1511 bp downstream
Tssr65831	transcription start site region 65831	209 bp upstream
Tssr65832	transcription start site region 65832	629 bp upstream
Tssr65833	transcription start site region 65833	1026 bp upstream
Tssr65834	transcription start site region 65834	1080 bp upstream
Tssr71891	transcription start site region 71891	280 bp upstream
Tssr71892	transcription start site region 71892	239 bp downstream
Tssr71893	transcription start site region 71893	1081 bp downstream
Tssr71894	transcription start site region 71894	1102 bp downstream
Tssr71895	transcription start site region 71895	1115 bp downstream
Tssr71896	transcription start site region 71896	1145 bp downstream