rs31599176 SNP Detail

Summary

• ID
  rs31599176
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79211649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTGGTCA CCAAGCCTTG
  TCTTCTACAT CTTCTCATTC AAATACTGAG CCTCGTGGCA GTCACTAATG TGGGCAGAAA
  ATTCAGTCCT ATCTGGCACA GTGAGAAAAC AGACAAGAAC AGAGCATGGC CTCCAAGCTC
  CAGAACCACG TGAAGGCAGA GACCAGAACA AAACACTGCA CTAGTCTAAG GGTGGAGCTT
  M
  AACGAGGCCA AACCAAACCT GCCCAATCCT GTCGGGCTGG CAAGAGGGCA GGTGGGGGAA
  CTTTAGAGGA AGGATTGGTA TTTGTTTGCG ATCATGTGAA CTGCCCATTA AAAATACAGG
  CAGAGATCCA TAAACCCTTG TGCCCTCCCA GTCGCACTCA CACCCAAATC CCTAGTCACA
  GTCACCTGGG TCACAGGCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss48068369	NES12091167	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31599176					SNP	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48068369	NES12091167	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79211649 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	178 bp upstream
Cpgi7329	CpG island 7329	350 bp proximal
Pla2g6	phospholipase A2, group VI	within coordinates
Rr404497	regulatory region 404497	772 bp upstream
Rr505593	regulatory region 505593	within coordinates
Rr505594	regulatory region 505594	271 bp proximal
Rr505595	regulatory region 505595	505 bp proximal
Rr505596	regulatory region 505596	1994 bp proximal
Tssr132082	transcription start site region 132082	134 bp upstream
Tssr135328	transcription start site region 135328	677 bp downstream
Tssr135329	transcription start site region 135329	705 bp downstream
Tssr135330	transcription start site region 135330	752 bp downstream