rs31599180 SNP Detail

Summary

• ID
  rs31599180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:79212747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGCACGC GGTCAGGCGC
  CGCCATCTTC TATAACTGCC CAATGGAAGC CGCTTCTGTT GCCAGGGGGC GGTCGGGCTT
  CTGACTGAAG CCAATTCTGC GTGGCTGATG GGGGCCATGC CTCGGGCGGG CGGAAGTTTC
  TCGTGAGGGC AGTTTGGCTG ACGTGTTGAT AAAGGGCAGG AGGCTGTTCC CGGCTCCCTT
  Y
  GACCTCAAGG AATCCAGGGT GGCTCGGACT CTGAACTTTT CTGTTTCTGG CAACACATGA
  AGATAATAAG AAAGAAAATC AATAAAGCCA CAGGATATAA CCGGGAAGAG CCTGCTTTGA
  TGTTGCCAGG TTCTCCCAAA CCAAATTGCA AATAAAAATA TGGAATTAAC GGTTAGGTTG
  AAATAAGACA AAATAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48068373	NES12091169	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31599180					SNP	T	C	C	C	C	C	T	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48068373	NES12091169	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79212747 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2310026G15Rik	RIKEN cDNA 2310026G15 gene			within coordinates
Cpgi7329	CpG island 7329			9 bp distal
Pla2g6	phospholipase A2, group VI			mRNA-UTR
				Noncoding-Transcript-Variant
Rr404497	regulatory region 404497			25 bp downstream
Rr505593	regulatory region 505593			594 bp distal
Rr505594	regulatory region 505594			806 bp distal
Rr505595	regulatory region 505595			within coordinates
Rr505596	regulatory region 505596			896 bp proximal
Rr505597	regulatory region 505597			1037 bp proximal
Rr505598	regulatory region 505598			1395 bp proximal
Rr505599	regulatory region 505599			1526 bp proximal
Tssr132082	transcription start site region 132082			953 bp downstream
Tssr135328	transcription start site region 135328			397 bp upstream
Tssr135329	transcription start site region 135329			356 bp upstream
Tssr135330	transcription start site region 135330			286 bp upstream