rs31599182 SNP Detail

Summary

• ID
  rs31599182
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:79212891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGCAGTT TGGCTGACGT
  GTTGATAAAG GGCAGGAGGC TGTTCCCGGC TCCCTTCGAC CTCAAGGAAT CCAGGGTGGC
  TCGGACTCTG AACTTTTCTG TTTCTGGCAA CACATGAAGA TAATAAGAAA GAAAATCAAT
  AAAGCCACAG GATATAACCG GGAAGAGCCT GCTTTGATGT TGCCAGGTTC TCCCAAACCA
  R
  ATTGCAAATA AAAATATGGA ATTAACGGTT AGGTTGAAAT AAGACAAAAT AAAAAAAACT
  TTCAGGTGGG GAGGGAGGTA ATACGCGCGC GCATATGTGT GGTGGGTGGT GGCCAACATA
  GGGTTTCTGT AGACCAAGCT GGCTATGAAC TCAGATTGCC TGGTGTGTGC CACAAGCTTT
  TTTTTTTTTT TTTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48068375	NES12091170	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31599182					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48068375	NES12091170	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79212891 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2310026G15Rik	RIKEN cDNA 2310026G15 gene			within coordinates
Cpgi7329	CpG island 7329			153 bp distal
Pla2g6	phospholipase A2, group VI			mRNA-UTR
				Noncoding-Transcript-Variant
Rr404497	regulatory region 404497			169 bp downstream
Rr505593	regulatory region 505593			738 bp distal
Rr505594	regulatory region 505594			950 bp distal
Rr505595	regulatory region 505595			within coordinates
Rr505596	regulatory region 505596			752 bp proximal
Rr505597	regulatory region 505597			893 bp proximal
Rr505598	regulatory region 505598			1251 bp proximal
Rr505599	regulatory region 505599			1382 bp proximal
Tssr132082	transcription start site region 132082			1097 bp downstream
Tssr135328	transcription start site region 135328			541 bp upstream
Tssr135329	transcription start site region 135329			500 bp upstream
Tssr135330	transcription start site region 135330			430 bp upstream