rs31599200 SNP Detail

Summary

• ID
  rs31599200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98853242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA ACCCACAAAC AAAGAATTGT
  Y
  TACTTCTTGC ATATTTCCTA GGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39306278	mCV25405381	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148461912	ENSMUSSNP4668822	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss325079280	CHEV_15_98785792	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31599200					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98853242 () rs orientation: forward

Symbol	Name	Function Class
B430209F14Rik	RIKEN cDNA B430209F14 gene	20 bp upstream
Cpgi7685	CpG island 7685	1645 bp distal
Gm49450	predicted gene, 49450	1810 bp upstream
Gm56698	predicted gene, 56698	within coordinates
Rr404613	regulatory region 404613	1590 bp downstream
Rr509237	regulatory region 509237	1821 bp distal
Rr509238	regulatory region 509238	1701 bp distal
Rr509239	regulatory region 509239	1168 bp distal
Rr509240	regulatory region 509240	within coordinates
Tssr132971	transcription start site region 132971	1592 bp downstream
Tssr136334	transcription start site region 136334	1842 bp upstream
Tssr136335	transcription start site region 136335	1828 bp upstream
Tssr136336	transcription start site region 136336	1801 bp upstream
Tssr136337	transcription start site region 136337	1770 bp upstream
Tssr136338	transcription start site region 136338	1754 bp upstream
Tssr136339	transcription start site region 136339	1702 bp upstream
Tssr136340	transcription start site region 136340	1685 bp upstream
Tssr136341	transcription start site region 136341	1662 bp upstream
Tssr136342	transcription start site region 136342	98 bp downstream
Tssr136343	transcription start site region 136343	1786 bp downstream
Tuba1a	tubulin, alpha 1A	1860 bp upstream