rs31599228 SNP Detail

Summary

• ID
  rs31599228
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44890203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGTGAAG ATTAAGTCTT
  TGCACCATTT CTGCCTGTGG CATCAAGGAA TCAAAGCACT GGGGTCACAC AGGGGTGGAA
  GGCTGCGCCC AGAGGCAAAG GCGCTGCGGC GCACGCGCAG TCAGAAGCTG CGAGCACGTG
  TATGTGCACG CGCACCGGAA GCGCCACAGC AAACTCCTTC GCGTGGGTAG AGGAAGGAGG
  M
  GAGACGGGAG CAATAGCGCA GAGACACAGA AAGGGCAGGG AAGGCCTCGT GGGTTCACGA
  TGTGGGAACT GCCTTCCAGG GGGCCGGAGG GCCTGGGGAG GTCGCTAAGC TTCCATGCCG
  AGGCCTCCCG GACCTTTTCA CCCAGACAGC CGCTGGAGAG TTCAGCGGGG ATCTCGAGGC
  CCGGGCGGTG AGACCGACGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46048653	mCV27566865	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss149131922	ENSMUSSNP4975636	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31599228					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44890203 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	1664 bp upstream
Cpgi19038	CpG island 19038	within coordinates
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	306 bp upstream
Tssr66503	transcription start site region 66503	295 bp upstream
Tssr66504	transcription start site region 66504	330 bp upstream
Tssr72352	transcription start site region 72352	1915 bp upstream
Tssr72353	transcription start site region 72353	1713 bp upstream
Tssr72354	transcription start site region 72354	1676 bp upstream
Tssr72355	transcription start site region 72355	1646 bp upstream
Tssr72356	transcription start site region 72356	1492 bp upstream
Tssr72357	transcription start site region 72357	1484 bp upstream
Tssr72358	transcription start site region 72358	1459 bp upstream
Tssr72359	transcription start site region 72359	1429 bp upstream
Tssr72360	transcription start site region 72360	1392 bp upstream
Tssr72361	transcription start site region 72361	1369 bp upstream