rs31599406 SNP Detail

Summary

• ID
  rs31599406
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4526767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAA AGTCTCCGAG GGTTTGGTTG
  M
  AGTGTGAGGG GCGAACCCAG CCACC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46048750	mCV22879967	ABI	CRAMUS_MOUSE	f	SNP		C	A		A
ss60964941	NES16164652	PERLEGEN	MM_PANEL2	f	SNP	C			C	A	A	A		C	A	A	C		C
ss148179454	ENSMUSSNP1250630	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
ss322094967	CHEV_7_4475370	CHEVERUD	SCREENING_POP	f	SNP								C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31599406					SNP	C	C	A	C	A	A	A	C	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60964941	NES16164652	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4526767 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	1848 bp distal
Dnaaf3	dynein, axonemal assembly factor 3	within coordinates
Tnni3	troponin I, cardiac 3	539 bp upstream
Tssr64337	transcription start site region 64337	1923 bp downstream
Tssr70484	transcription start site region 70484	1865 bp upstream
Tssr70485	transcription start site region 70485	1319 bp upstream
Tssr70486	transcription start site region 70486	956 bp upstream
Tssr70487	transcription start site region 70487	939 bp upstream
Tssr70488	transcription start site region 70488	569 bp downstream